PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00003498001
Common NameGSBRNA2T00003498001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 192aa    MW: 21063.5 Da    PI: 9.406
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00003498001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.76.9e-402786261
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                         ++++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rkn k+
  GSBRNA2T00003498001 27 EQEQLKCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSRKNAKR 86
                         57899***************************************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027012.0E-332985IPR003851Zinc finger, Dof-type
ProDomPD0074788.0E-263186IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.3943185IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103369IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MQDPSAYYNS MMATQQQQQQ QPQQFPEQEQ LKCPRCDSPN TKFCYYNNYN LSQPRHFCKS  60
CRRYWTKGGA LRNVPVGGGS RKNAKRPTSA SSPPNTHKKK TKHPDPNPDT DPTRMLYGFP  120
IGDQDVKGME MGGGGGSFSS LLASNMQLGL GGIILDGSGW DPGMGLKRSE AGDEGGGNPW  180
TDLSRNRVEK N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.127180.0root| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893443e-79AC189344.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB042J11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145494.11e-140PREDICTED: dof zinc finger protein DOF3.1-like
SwissprotQ94AR63e-79DOF31_ARATH; Dof zinc finger protein DOF3.1
TrEMBLA0A078INE51e-141A0A078INE5_BRANA; BnaA05g36740D protein
STRINGBra031269.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12692896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21270.14e-61DOF zinc finger protein 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]